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Setup
Episodes
Welcome
Introduction
Sequence Read Quality Lecture
Sequence assembly
Introduction day 2
Sequence Assembly Lecture
Sequence Quality
Self Study: Inspecting sequence graphs
MLST
Resistance genes
Introduction day 3 - work on day 2 exercises by yourself
Plasmid typing and classification
Annotation
Visualizing genomic regions using Clinker
Introduction day 4
Pangenome analysis
Phylogenetic trees from the core genome and visualization
Self Study: Bacterial GWAS Lecture
Self Study: Bacterial GWAS
Wrapup
All in one page (Beta)
Extras
Reference
About
Discussion
Figures
Instructor Notes
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TRIUMPH Microbial Genomics course
: Instructor Notes